Publications by by former staff members
back upThis list contains publications by colleagues and research assistants of David Mann, either in the University of Edinburgh, or in the Royal Botanic Garden Edinburgh.
Micha Bayer
topMann, D.G., Bayer, M.M., Droop, S.J.M., Hicks, Y.A., Marshall, A.D., Martin, R.R. & Rosin, P.L. (2007). New methods for preparing, imaging and typifying desmids (Chlorophyta, Zygnematophyceae), including extended depth of focus and 3-D reconstruction. Phycologia 46: 29-45.
Jalba, A.C., Wilkinson, M.H.F., Roerdink, J.B.T.M., Bayer, M.M. & Juggins, S. (2005). Automatic diatom identification using contour analysis by morphological curvature scale spaces. Machine Vision and Applications, 16: 217-228.
Mann, D.G., McDonald, S.M., Bayer, M.M., Droop, S.J.M., Chepurnov, V.A., Loke, R.E., Ciobanu, A. & du Buf, J.M.H. (2004). Morphometric analysis, ultrastructure and mating data provide evidence for five new species of Sellaphora (Bacillariophyceae). Phycologia 43: 459-482.
Loke, R.E., du Buf, J.M.H., Bayer, M.M. & Mann, D.G. (2004). Diatom classification in ecological applications. Pattern Recognition 37: 1283–1285.
Bayer, M.M. (2002). Automatische Bestimmung von Diatomeen durch Bildanalyse – das ADIAC Project. In E. Rott & N. Binder (eds) Kurzfassungen der Vorträge und Poster, 16 Treffen Deutschsprachiger Diatomologen mit internationaler Beteiligung, 15–17 März 2002, Innsbruck, pp. 14–15. Eugen Rott, Innsbruck.
Bayer, M.M. & Juggins, S. (2002). ADIAC imaging techniques and databases. In: Du Buf, J.M.H. & Bayer, M.M. (eds.) Automatic Diatom Identification, pp. 55–73.. Series in Machine Perception and Artificial Intelligence, vol. 51. World Scientific Publishing Co., Singapore.
du Buf, J M H & Bayer, M M. (eds.) (2002). Automatic Diatom Identification. Vol. 51, Series in Machine Perception and Artificial Intelligence, World Scientific Publishing Co., Singapore.
Du Buf, J.M.H. & Bayer, M.M. (2002). Introduction to ADIAC and this book. In: Du Buf, J.M.H. & Bayer, M.M. (eds.) Automatic Diatom Identification, pp. 1–8. Series in Machine Perception and Artificial Intelligence, vol. 51. World Scientific Publishing Co., Singapore.
Du Buf, J.M.H. & Bayer, M.M. (2002). ADIAC achievements and future work. In: Du Buf, J.M.H. & Bayer, M.M. (eds.) Automatic Diatom Identification, pp. 289–298. Series in Machine Perception and Artificial Intelligence, vol. 51. World Scientific Publishing Co., Singapore.
Hageman, S J, Bayer, M M & Todd, C D. (2002). Partitioning phenotypic variation: implications for morphometric analyses (Bryozoa). Proceedings of the 12th Meeting of the International Bryozoology Association, Dublin, Ireland, 2001.
Hicks, Y., Marshall, D., Martin, R.R., Rosin, P.L., Bayer, M.M & Mann, D.G. (2002). Modelling life cycle related and individual shape variation in biological specimens. Proceedings of British Machine Vision Conference (BMVC2002), 2-5 Sept, Cardiff, UK (Ed. by Paul Rosin and David Marshall), vol. 1: 323–332. British Machine Vision Association.
Hicks, Y., Marshall, D., Martin, R.R., Rosin, P.L., Bayer, M.M & Mann, D.G. (2002). Automatic landmarking for building biological shape models. Proceedings of the 2002 IEEE International Conference on Image Processing (ICIP 2002), 22-25 Sept, Rochester, NY, USA, vol 2, pp. 801–804, IEEE Press.
Kelly, M.G., Bayer, M.M., Hürlimann, J. & Telford, R.J. (2002). Human error and quality assurance in diatom analysis. In: Du Buf, J.M.H. & Bayer, M.M. (eds.) Automatic Diatom Identification, pp. 75–91. Series in Machine Perception and Artificial Intelligence, vol. 51. World Scientific Publishing Co., Singapore.
Bayer, M M, Droop, S J M & Mann, D G. (2001). Digital microscopy in phycological research, with special reference to microalgae. Phycological Research 49: 263-274.
Bayer, M M, Pullan, M, Mann, D, Juggins, S, Ciobanu, A, Santos, L, Shahbazkia, H, du Buf, H, Fischer, S, Bunke, H, Wilkinson, M, Roerdink, J B T M, Pech-Pacheco, J-L, Cristobal, G, Cirimele, V, & Ludes, B. (2001). ADIAC: Using computer vision technology for automatic diatom identification. Pp. 537-562 in: Proceedings of the 16th International Diatom Symposium (A. Economou-Amilli, ed.), University of Athens, Greece.
Wilkinson, M.H.F., Roerdink, J.B.T.M., Droop, S. & Bayer, M. (2000). Diatom contour analysis using morphological curvature scale spaces. Proceedings of the 15th International Conference on Pattern Recognition, Barcelona, 3-8 Sept. 2000, pp. 656-659.
Du Buf, H., Bayer, M.M., Droop, S. Head, R., Juggins, S., Fischer, S., Bunke, H., Wilkinson, M., Roerdink, J., Pech-Pacheco, J. & Cristobal, G. (2000). Diatom identification: a double challenge called ADIAC. In Proceedings of the 10th International Conference on Image Analysis and Processing, Venice, Italy, September 27–29, 1999, pp. 734–739.
Helen Jones
topJones, H.M., Simpson, G.E., Stickle, A.J. & Mann, D.G. (2005). Life history and systematics of Petroneis (Bacillariophyta), with special reference to British waters. European Journal of Phycology 40: 43–71.
Gillian Simpson
topJones, H.M., Simpson, G.E., Stickle, A.J. & Mann, D.G. (2005). Life history and systematics of Petroneis (Bacillariophyta), with special reference to British waters. European Journal of Phycology 40: 43–71.
Mann, D.G., Simpson, G.E., Sluiman, H.J. & Möller, M. (2001). rbcL gene tree of diatoms: a second large data-set for phylogenetic reconstruction. Phycologia 40(4), supplement, 1-2..
Alan Stickle
topMann, D.G. & Stickle, A.J. (2009). Cytological characteristics of the Sellaphoraceae. Acta Botanica Croatica 68: 239–250.
Jones, H.M., Simpson, G.E., Stickle, A.J. & Mann, D.G. (2005). Life history and systematics of Petroneis (Bacillariophyta), with special reference to British waters. European Journal of Phycology 40: 43–71.
Mann, D.G. & Stickle, A.J. (1997). Sporadic evolution of dorsiventrality in raphid diatoms, with special reference to Lyrella amphoroides sp. nov. Nova Hedwigia 65: 59-77.
Mann, D.G. & Stickle, A.J. (1996). The systematics of Stauroneis (Bacillariophyta) II. The life history of S. phoenicenteron and related species. Diatom Research 10: 277-297.
Mann, D.G. & Stickle, A.J. (1995). Sexual reproduction and systematics of Placoneis (Bacillariophyta). Phycologia 34: 74-86.
Mann, D.G. & Stickle, A.J. (1993). Life history and systematics of Lyrella. Nova Hedwigia, Beiheft 106: 43-70.
Mann, D.G. & Stickle, A.J. (1991). The genus Craticula. Diatom Research 6: 79-107
Mann, D.G. & Stickle, A.J. (1989). Meiosis, nuclear cyclosis, and auxospore formation in Navicula sensu stricto (Bacillariophyta). British Phycological Journal 24: 167-181.
Stickle, A.J. & Mann, D.G. (1988). Protoplast structure and behaviour in Stauroneis and its taxonomic implications. In F.E. Round (ed.) Proceedings of the 9th International Diatom Symposium, 293-301. Biopress, Bristol and O. Koeltz, Koenigstein.
Mann, D.G. & Stickle, A.J. (1988). Nuclear movements and frustule symmetry in raphid pennate diatoms. In F.E. Round (ed.) Proceedings of the 9th International Diatom Symposium, 281-289. Biopress, Bristol and O. Koeltz, Koenigstein.
Stickle, A.J. & Mann, D.G. (1986). The cell cycle and systematics in diatoms. British Phycological Journal 21: 337.
Stickle, A.J. (1986). Mastogloia smithii has a method of sexual reproduction hitherto unknown in raphid diatoms. Diatom Research 1: 271–282.